PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_A201C1A09.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 147aa MW: 16916.3 Da PI: 7.9922

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_A201C1A09.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51	4.9e-16	3	108	18	90
FAR1 18 kskkskrngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkaklkvkke 71 +s+k ++ge +k++fvC+k k++ ++ ++k+r++ + +tgCkak+ vk Traes_7BL_A201C1A09.2 3 SSRKDMKTGELIKQQFVCNKFRKPDVDEGGaekipvlddiveqakddnedeaivfldddskgktRSKKRKRDKIVQTGCKAKMIVKVI 90 6788899***********999998887799**************************98889999999*********** PP FAR1 72 kdgkwevtkleleHnHela 90 dg+wev+ +++eHnH+l Traes_7BL_A201C1A09.2 91 -DGRWEVIYFVSEHNHPLI 108 .**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-14	3	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MNSSRKDMKT GELIKQQFVC NKFRKPDVDE GGAEKIPVLD DIVEQAKDDN EDEAIVFLDD 60 DSKGKTRSKK RKRDKIVQTG CKAKMIVKVI DGRWEVIYFV SEHNHPLIDK PCLTKYLRSH 120 QGIPPEERAF LTHLHNCNLT TGFEPHP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194049.1	6e-49	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446TNG9	2e-83	A0A446TNG9_TRITD; Uncharacterized protein
STRING	Traes_7BL_A201C1A09.2	1e-106	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]