PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_C4BA39104.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 89aa    MW: 9746.17 Da    PI: 10.2911
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_C4BA39104.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP43.39.4e-145988130
                           --SSTT-----TT--HHHHHTT--HHHHT- CS
                    SBP  1 lCqvegCeadlseakeyhrrhkvCevhska 30
                           +Cqve+C+adls ak+yhrrhkvCe h+ka
  Traes_7BL_C4BA39104.1 59 RCQVEDCKADLSGAKHYHRRHKVCEYHAKA 88
                           6***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-155288IPR004333Transcription factor, SBP-box
PROSITE profilePS5114114.1275789IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.23E-135888IPR004333Transcription factor, SBP-box
PfamPF031101.0E-86088IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MVKREGGGAG DAGRIGLNLG HRTYFSPGDM LAVDRMLMRS RLGGVFGLGF GRAHHQAPRC  60
QVEDCKADLS GAKHYHRRHK VCEYHAKAA
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764431e-108AK376443.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146778.16e-47squamosa promoter-binding-like protein 10
SwissprotA2YFT94e-34SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE84e-34SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A446YWG12e-58A0A446YWG1_TRITD; Uncharacterized protein
STRINGTraes_7BL_C4BA39104.11e-58(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-18squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]