PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_DA7413B04.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 118aa    MW: 13629.6 Da    PI: 10.8097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_DA7413B04.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-083884347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47
                            WT eE + lvd+v  +G g W++  ++      Rt+ ++k++w+++
  Traes_7BL_DA7413B04.1 38 HWTSEEVKELVDGVSVYGVGPWTKLKNERFpiSVRTAVHLKDKWRNL 84
                           6***********************9876545*77***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.4673189IPR017930Myb domain
SuperFamilySSF466891.2E-1333109IPR009057Homeodomain-like
SMARTSM007171.7E-43587IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-103886IPR009057Homeodomain-like
PfamPF139211.1E-53984No hitNo description
CDDcd116602.54E-173986No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
VRSARERGTW SINIEPCSRD LCSASEGQKH GSRRNNDHWT SEEVKELVDG VSVYGVGPWT  60
KLKNERFPIS VRTAVHLKDK WRNLVKAFTG NVKRRVTPRL DKNCIEKIKR LAADYPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189262.12e-57uncharacterized protein LOC109774912
TrEMBLA0A446YX261e-76A0A446YX26_TRITD; Uncharacterized protein
TrEMBLA0A453T6161e-76A0A453T616_AEGTS; Uncharacterized protein
STRINGTraes_7BL_DA7413B04.16e-82(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.13e-14TRF-like 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]