PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_EE72D8712.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 225aa MW: 24282.2 Da PI: 10.6628

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_EE72D8712.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	20.7	7.2e-07	116	138	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC l Y rGA +VRC+ C+ Traes_7BL_EE72D8712.1 116 CNGCFSLVLYNRGAANVRCSRCN 138 **********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	8.2E-4	98	180	No hit	No description
TIGRFAMs	TIGR01053	7.0E-7	114	141	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.6E-7	116	138	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.0E-7	151	179	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-4	154	177	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
KGIHPFHHRR RPGPAVSRIP RIYPIQQIHP SPGHPSPINC TPPRRFLPPW SSPSSLSSLI 60 SLATYFFHLP LSPTHLSLSA SAIGASRLLG SLLGMPRCTS SVNYQTETAA MSELICNGCF 120 SLVLYNRGAA NVRCSRCNML NSTRSASQYA HLKCGGCRXX XYPPGASTVG CATCHHVNPV 180 RAQGSSAPPD AHARPQTVLV ENPRTMNDKG KLVSNVAVGV TSWKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249896	0.0	AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence.
GenBank	AK353682	0.0	AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167616.1	3e-86	protein LOL4-like
Swissprot	Q84UR0	1e-45	LOL4_ORYSJ; Protein LOL4
TrEMBL	A0A446YI65	1e-144	A0A446YI65_TRITD; Uncharacterized protein
STRING	Traes_7BL_EE72D8712.1	1e-159	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12333	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	2e-20	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]