PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_03F39ED94.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 62aa    MW: 7543.56 Da    PI: 10.2306
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_03F39ED94.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.54.5e-242612492
                           SSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
           HSF_DNA-bind 24 ngnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
                           +g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+
  Traes_7BS_03F39ED94.1  2 DGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 61
                           789****************************************999.........***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-20162IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-26161IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.25E-22161IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-21261IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-111830IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401943IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-113143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
EDGSAFIVWR PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKIVPDRWEF ANDCFRRGEK  60
RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-1736243113Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7717554e-97JQ771755.1 Triticum aestivum HSF3 mRNA, complete cds.
GenBankKP0635424e-97KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197754.15e-41heat stress transcription factor B-2b-like
SwissprotQ652B05e-40HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLF2EA614e-40F2EA61_HORVV; Predicted protein
TrEMBLM0Z0T04e-40M0Z0T0_HORVV; Uncharacterized protein
STRINGMLOC_75166.46e-41(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-39HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]