PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_17C8D2707.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 284aa    MW: 32613.4 Da    PI: 7.2083
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_17C8D2707.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.44.2e-25211260151
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                            kpr++W+ eLH++Fv av+qL G++kA+Pk++lelm+v+ Lt+e+v+SHLQ
  Traes_7BS_17C8D2707.1 211 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRVLELMNVEKLTRENVASHLQ 260
                            79*******************.***************************** PP
2Response_reg77.83.9e-26301381109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ m++mdG++ll+     e++lp+i+++ +ge + +
  Traes_7BS_17C8D2707.1  30 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKnmFDLVISDVHMSDMDGFKLLELVGL-EMDLPVIMLSVNGETKSV 115
                            799********************.***************999999*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                            l+ +  Ga d+l Kp+ +eel++
  Traes_7BS_17C8D2707.1 116 LKGITHGACDYLLKPVRIEELRN 138
                            *********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.2E-1435264IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.4E-4127151No hitNo description
SuperFamilySSF521721.57E-3427156IPR011006CheY-like superfamily
SMARTSM004481.6E-2928140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.68829144IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.7E-2330138IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.10E-2431143No hitNo description
Gene3DG3DSA:1.10.10.601.4E-25208261IPR009057Homeodomain-like
SuperFamilySSF466893.4E-16209266IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-23211264IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLLDDMMMEG RKGLMERERE RDQFPVGMRV LAVDDDPVCL KVLEVLLRRC QYHVTTTNQA  60
ATALRLLREN KNMFDLVISD VHMSDMDGFK LLELVGLEMD LPVIMLSVNG ETKSVLKGIT  120
HGACDYLLKP VRIEELRNVW QHVVRRKFSN REPNNLDFCK EISRDSYHRL GQATCDRSSD  180
QSNRASKKRK ELHNEEEDEG EDNDNAAASK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR  240
VLELMNVEKL TRENVASHLQ LCFLELTDDK GNNTRDKRRG QGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20208260254ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175011.11e-171two-component response regulator ORR22-like isoform X3
RefseqXP_020175012.11e-171two-component response regulator ORR22-like isoform X4
SwissprotB8B3I41e-142ORR22_ORYSI; Two-component response regulator ORR22
TrEMBLA0A446Y4J30.0A0A446Y4J3_TRITD; Uncharacterized protein
STRINGTraes_7BS_17C8D2707.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-102response regulator 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]