PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_209950516.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8587.08 Da    PI: 10.8526
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_209950516.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.51.2e-251059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           r+en s+rqvtfskRr g+lKKA EL +LC+++v vi+fsst +lyey++
  Traes_7BS_209950516.1 10 RVENMSRRQVTFSKRRGGLLKKARELAILCNVQVGVIVFSSTCRLYEYAN 59
                           79**********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.544161IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-24365IPR002100Transcription factor, MADS-box
PfamPF003192.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MVRGKIVIRR VENMSRRQVT FSKRRGGLLK KARELAILCN VQVGVIVFSS TCRLYEYANS  60
TTATTMGTTC SLDDATL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153605.12e-33MADS-box transcription factor 25-like
SwissprotQ6VAM47e-24MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLA0A3B6S8Y89e-41A0A3B6S8Y8_WHEAT; Uncharacterized protein
TrEMBLA0A3B6SD006e-41A0A3B6SD00_WHEAT; Uncharacterized protein
TrEMBLA0A446Y1P54e-41A0A446Y1P5_TRITD; Uncharacterized protein
TrEMBLA0A446Y1V36e-41A0A446Y1V3_TRITD; Uncharacterized protein
TrEMBLA0A446Y1Z67e-41A0A446Y1Z6_TRITD; Uncharacterized protein
TrEMBLA0A446Y2669e-41A0A446Y266_TRITD; Uncharacterized protein
STRINGTraes_7BS_209950516.19e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.13e-26AGAMOUS-like 44
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]