PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_33B5A5D5C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 351aa    MW: 38163.5 Da    PI: 5.0353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_33B5A5D5C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-09275323355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Traes_7BS_33B5A5D5C.1 275 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 323
                            58*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-10270327No hitNo description
SuperFamilySSF474598.51E-17270340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16275337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6275323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
METNEKNAAD LEEKNXXXXX XXXXXXXXXX XFSLSPEAQM DSSSSALAAM GNPFPPGLWN  60
PPGQNFGLGE TNTNAMLNGH QFSSFLGMLS AATPAYPGAQ SGFMDCGTGF PGLSANSLGA  120
MMDHPFSRNP PMGSFQNDIE TSREMNVDEG CKDALLTGDR QQGDAESSHG VDASSKELSK  180
PECSGGAGQD EGPSVSCPKK RKRPSQDRGV KNVQEGSQQL ATLAAKQEKD DDDKDEPKRP  240
IGTSRKSNGK QTEDKSDAPK EDYIHIRARS GQATNSHSLA ERVRREKISE RMKFLQDLVP  300
GCSKVIGKAV MLDEIINYVQ SLQRQVEFLS MKLSAVNPAL DFNIERILSK D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203PKKRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691070.0AK369107.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151883.10.0transcription factor bHLH49-like
TrEMBLM0Y3B40.0M0Y3B4_HORVV; Uncharacterized protein
STRINGTraes_7BS_33B5A5D5C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-58bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]