PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_4D5DE99CC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 81aa    MW: 9100.53 Da    PI: 4.4296
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_4D5DE99CC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-171312050
                           HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyeys 50
                           ++KKA+ELSvLCdaeva+++fs+ g+lye+ 
  Traes_7BS_4D5DE99CC.1  1 LFKKAFELSVLCDAEVALVVFSPAGRLYEFV 31
                           8*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.61134IPR002100Transcription factor, MADS-box
PfamPF003197.4E-15130IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-4133IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-16149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
LFKKAFELSV LCDAEVALVV FSPAGRLYEF VSSDTSVEQI FGRCKDIPDT VIDDLNIAAR  60
DPRGYCNIQV RNMYVCVYML G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181042.13e-42MADS-box transcription factor 51-like
TrEMBLA0A453RMX52e-50A0A453RMX5_AEGTS; Uncharacterized protein
STRINGTraes_7BS_4D5DE99CC.13e-53(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-15AGAMOUS-like 14
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]