PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BS_5F17B1022.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 196aa MW: 23329.8 Da PI: 8.8696

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BS_5F17B1022.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.5e-10	64	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E e++ + v+ G++ Wkt ar++g +++ ++k+ w+ Traes_7BS_5F17B1022.2 64 KWTDDEKEKIRRFVEINGTD-WKTLARELG--KSEIHVKDTWRRM 105 8*****************.****8..9*****99975 PP
2	Myb_DNA-binding	22	3.8e-07	112	174	1	47
TSSS-HHHHHHHHHHHHH.TTTT..................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGgg..................tWktIartmgkgRtlkqcksrwqky 47 +grWT++E++ l d+v++ l + +W++I+ ++ +R k+c ++w+ Traes_7BS_5F17B1022.2 112 KGRWTQDEHQNLFDLVNLdL--RlkahqiknpdhrmlrdniSWEAISDKLT-TRNHKNCCLKWYET 174 79************8532..3346689999**************9.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.8E-4	61	108	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.202	63	110	IPR017930	Myb domain
SuperFamily	SSF46689	2.03E-9	63	123	IPR009057	Homeodomain-like
CDD	cd00167	0.00255	64	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-9	64	116	IPR009057	Homeodomain-like
Pfam	PF13921	1.2E-9	65	123	No hit	No description
PROSITE profile	PS50090	8.014	107	175	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.13E-6	108	189	IPR009057	Homeodomain-like
SMART	SM00717	0.0019	111	177	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-9	117	177	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEAMRDYAEL KQLGEKGLEM IGSCSKYPEL KGCWDDIAKS LPHRPHEAIY HRARILLYRG 60 AERKWTDDEK EKIRRFVEIN GTDWKTLARE LGKSEIHVKD TWRRMKPKNL KKGRWTQDEH 120 QNLFDLVNLD LRLKAHQIKN PDHRMLRDNI SWEAISDKLT TRNHKNCCLK WYETLASPMV 180 KEGIWSDVDD YLLVEA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363003	0.0	AK363003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012C19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166591.1	1e-135	uncharacterized protein LOC109752133
TrEMBL	A0A446YA59	1e-140	A0A446YA59_TRITD; Uncharacterized protein
STRING	Traes_7AS_B6ADF4159.1	1e-137	(Triticum aestivum)
STRING	Traes_7BS_5F17B1022.2	1e-143	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5405	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	2e-65	MYB_related family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]