PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BS_7ACA0B10A.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 767aa MW: 85126.7 Da PI: 7.4789

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BS_7ACA0B10A.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.2	4e-37	117	192	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC+adl + ++yhrrhkvCe h+k++ v ++++e+rfCqqCsrfh ++efDe+k+sCr+rLa+hn+rrrk+ Traes_7BS_7ACA0B10A.2 117 CQVDGCHADLGDDRDYHRRHKVCEPHTKSTLVRIKNIEHRFCQQCSRFHLVQEFDEGKKSCRSRLATHNRRRRKAP 192 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-30	109	178	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.214	114	191	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-34	115	194	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.8E-28	117	190	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MSGGLKNKKK KGHEWDLNDW RWDGNLFLAT PSPNADAPSG CGSRELGLAE EGGSFGAAAA 60 DKRRRRKRVT TVDNPEECSN TAILHHERIA VRRGQMGEEE GPASATAGAS SSSAPSCQVD 120 GCHADLGDDR DYHRRHKVCE PHTKSTLVRI KNIEHRFCQQ CSRFHLVQEF DEGKKSCRSR 180 LATHNRRRRK APAEAVNSLG ENQSLTNTLL LLLRQLAGQD SAASSSEQIN GPNLLVSLLK 240 NLAAVAGTQA CQDMLKDATS SNAGNYVGNQ SGPPVHAEEP PVKRRAQNFD LNDAYVEEDE 300 SRTDKIVFKL FGKQPNDFPA DLRAQQILNW LSHYPSDMES YIRPGCVILT IYLRLPNWMW 360 DKLNVDPAPW IENLISISTN GFWETGWLYA RVQDRLTLSC NGRLMLVSPW QPVIGDKHQI 420 LCVTPIAAAY NSTAKFSVRG FNIVQPTTKL LCIFDGKYLV QEATQKLHDD TRIQQGPKCL 480 TFSCSFPSTS GRGFIEVEDY DQSSICFPFV VAKESICCEI RMLEEKLNII AFGDALEGRE 540 DLMASRSQAL KFLHEIGWLL QRSDTRATSS KAPQQHHAVG FSAARFRWLL SFAVDQEWCG 600 VVKMLLDTLF QGNIDVASPV EFVLGESLVF AAVNKRSKPL VACLLRYTTK SAPVGGGAVA 660 TPAQFLFTPD MIGPSDITPL HVAATITNAA AVLDALTDDP QQLGIKTWKN ARDATGYTPE 720 XXXXXXRTNL LHPDGPEQNQ QQVTCSPCVC SHDHHWYRRR SRSAEIN

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MSGGLKNKKK KGHEWDLNDW RWDGNLFLAT PSPNADAPSG CGSRELGLAE EGGSFGAAAA  60
DKRRRRKRVT TVDNPEECSN TAILHHERIA VRRGQMGEEE GPASATAGAS SSSAPSCQVD  120
GCHADLGDDR DYHRRHKVCE PHTKSTLVRI KNIEHRFCQQ CSRFHLVQEF DEGKKSCRSR  180
LATHNRRRRK APAEAVNSLG ENQSLTNTLL LLLRQLAGQD SAASSSEQIN GPNLLVSLLK  240
NLAAVAGTQA CQDMLKDATS SNAGNYVGNQ SGPPVHAEEP PVKRRAQNFD LNDAYVEEDE  300
SRTDKIVFKL FGKQPNDFPA DLRAQQILNW LSHYPSDMES YIRPGCVILT IYLRLPNWMW  360
DKLNVDPAPW IENLISISTN GFWETGWLYA RVQDRLTLSC NGRLMLVSPW QPVIGDKHQI  420
LCVTPIAAAY NSTAKFSVRG FNIVQPTTKL LCIFDGKYLV QEATQKLHDD TRIQQGPKCL  480
TFSCSFPSTS GRGFIEVEDY DQSSICFPFV VAKESICCEI RMLEEKLNII AFGDALEGRE  540
DLMASRSQAL KFLHEIGWLL QRSDTRATSS KAPQQHHAVG FSAARFRWLL SFAVDQEWCG  600
VVKMLLDTLF QGNIDVASPV EFVLGESLVF AAVNKRSKPL VACLLRYTTK SAPVGGGAVA  660
TPAQFLFTPD MIGPSDITPL HVAATITNAA AVLDALTDDP QQLGIKTWKN ARDATGYTPE  720
XXXXXXRTNL LHPDGPEQNQ QQVTCSPCVC SHDHHWYRRR SRSAEIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-25	108	190	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	KRRRRK
2	61	67	KRRRRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252086	0.0	AK252086.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf140n19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160962.1	0.0	squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A3B6SH70	0.0	A0A3B6SH70_WHEAT; Uncharacterized protein
STRING	Traes_7BS_7ACA0B10A.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-141	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]