PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_9D42F9BEA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 162aa    MW: 18538.2 Da    PI: 7.6739
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_9D42F9BEA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.5e-141312151
                           HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                           +KKA EL +LCda+ a+i+fsstg+ly+++s
  Traes_7BS_9D42F9BEA.2  1 MKKARELAILCDADLALIVFSSTGRLYDFAS 31
                           8****************************86 PP
2K-box73.27.7e-2554143998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            + +++a+ +q+e++ L+++++nLq+++R+llGe+L+  ++++Lq L +q+e sl ++R++K++++ ++i+el +k   +q+en +L k
  Traes_7BS_9D42F9BEA.2  54 NPTSEAKLWQREVTTLRQQVQNLQHNNRQLLGEELSGTTVRDLQFLVNQVEMSLHSVRKRKEQVMAAEIHELNQKGFLIQKENIELGK 141
                            56788999******************************************************************************99 PP

                  K-box  97 kl 98 
                            kl
  Traes_7BS_9D42F9BEA.2 142 KL 143
                            87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.699133IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-16164IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-4132IPR002100Transcription factor, MADS-box
PfamPF003191.2E-11129IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2456143IPR002487Transcription factor, K-box
PROSITE profilePS5129713.26559149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKKARELAIL CDADLALIVF SSTGRLYDFA SSSGMEAILE RYQEAKEEHC GVLNPTSEAK  60
LWQREVTTLR QQVQNLQHNN RQLLGEELSG TTVRDLQFLV NQVEMSLHSV RKRKEQVMAA  120
EIHELNQKGF LIQKENIELG KKLSIAHEHN IELQKKVRNA TS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029030.0AM502903.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31C (WM31C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171925.11e-107MADS-box transcription factor 25-like
SwissprotQ84NC56e-81MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A446Y1U51e-114A0A446Y1U5_TRITD; Uncharacterized protein
STRINGTraes_7BS_9D42F9BEA.21e-115(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-46AGAMOUS-like 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]