PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_CCA195724.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 425aa    MW: 48045 Da    PI: 7.2561
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_CCA195724.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.76.2e-2154120171
                E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealn..liekkekneirwkg 71 
                            rk+ksL+ll+++f++l+ + + ++v l+++a++L    v  +rRRiYDi+NVLe+++  l+ + +kn+++w+g
  Traes_7BS_CCA195724.2  54 RKQKSLGLLCSNFVALYDRDDVETVGLDDAARRL---GV--ERRRIYDIVNVLESVGvsLVRR-AKNRYTWIG 120
                            79****************9999************...**..*************986225666.*******98 PP
2E2F_TDP78.75.5e-25200280171
                E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                            rkeksL+lltq+f+kl+ + e ++v+l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Traes_7BS_CCA195724.2 200 RKEKSLGLLTQNFVKLFLTMEVETVSLDEAARLLLGErhaesNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 280
                            79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-2350121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.69E-1353119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-2554120IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-1855120IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-23198281IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-32200280IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-20201280IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.12E-12202280IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDPAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXACRHH AYSRKQKSLG  60
LLCSNFVALY DRDDVETVGL DDAARRLGVE RRRIYDIVNV LESVGVSLVR RAKNRYTWIG  120
FEGVPAALKE LKERTLREMS GLAPPPEESS AANVSDDEDD DDKLGDADGD ADSEKLSQSL  180
DNASDKPNVP MCPPRSVDHR KEKSLGLLTQ NFVKLFLTME VETVSLDEAA RLLLGERHAE  240
SNMRTKVRRL YDIANVLSSL NLIEKTQQVD SRKPAFRWLG QAKRKEGATV TVALPPSRKI  300
MSSKRAFGTD ITNIDNKRGK LVLETENKPK LMQGGSSMLK TFESQLGQGK SSGFVYGPFH  360
PAGARKHEVD DQTVRENEMK NIQDWESLAV SFRPQYQNHA LNDLFGHYVE AWKSWYLDLT  420
RDSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-35532723228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538540.0DQ353854.1 Triticum aestivum transcription regulator of the cell cycle TaE2Fe mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187543.10.0E2F transcription factor-like E2FE isoform X1
TrEMBLA0A446Y8C80.0A0A446Y8C8_TRITD; Uncharacterized protein
STRINGTraes_7BS_CCA195724.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-104DP-E2F-like 1