PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_D06222817.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 146aa    MW: 16596.4 Da    PI: 8.5504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_D06222817.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.3e-1497145348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            rW+  E+e l ++v+q+G+g+Wk I ++ +    gRt  ++k++w++ +
  Traes_7BS_D06222817.1  97 RWSSVEEETLRNGVEQFGSGNWKDILSHNPdvfIGRTQVDLKDKWRNMM 145
                            9*********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-1590146IPR009057Homeodomain-like
PROSITE profilePS5129415.23790146IPR017930Myb domain
SMARTSM007171.5E-494146IPR001005SANT/Myb domain
SuperFamilySSF466893.3E-1596146IPR009057Homeodomain-like
PfamPF002492.3E-1197144IPR001005SANT/Myb domain
CDDcd116603.05E-1898146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDKAVHINDE ELNNQAANCS VAGPSAVNDQ GETLRKGTPS SLMDWNPTAQ SLLWEDSLDP  60
DGSRSQSHRP HLPSPRRILV SPLQVAENKA RRRRARRWSS VEEETLRNGV EQFGSGNWKD  120
ILSHNPDVFI GRTQVDLKDK WRNMMR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755070.0AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185046.12e-86uncharacterized protein LOC109770747
TrEMBLA0A3B6S9Y51e-101A0A3B6S9Y5_WHEAT; Uncharacterized protein
TrEMBLA0A446Y4T41e-103A0A446Y4T4_TRITD; Uncharacterized protein
TrEMBLA0A446Y4U11e-101A0A446Y4U1_TRITD; Uncharacterized protein
STRINGTraes_7BS_D06222817.11e-104(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-16TRF-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]