PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_F4CFCDF52.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9404.98 Da    PI: 10.5893
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_F4CFCDF52.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.5e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           kri+nk  rqvtf+kRrng+lKKA+ELSvLCda va+iifs++g+l+e+s+
  Traes_7BS_F4CFCDF52.1  9 KRIDNKVSRQVTFAKRRNGLLKKAYELSVLCDAVVALIIFSTRGRLFEFST 59
                           79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.805161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.38E-35261No hitNo description
SuperFamilySSF554552.49E-28269IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGRGKVELKR IDNKVSRQVT FAKRRNGLLK KAYELSVLCD AVVALIIFST RGRLFEFSTS  60
SYMWCSCSRS TNQSYKCEIR AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-19161161Myocyte-specific enhancer factor 2B
1tqe_Q7e-19161161Myocyte-specific enhancer factor 2B
1tqe_R7e-19161161Myocyte-specific enhancer factor 2B
1tqe_S7e-19161161Myocyte-specific enhancer factor 2B
6c9l_A7e-19161161Myocyte-specific enhancer factor 2B
6c9l_B7e-19161161Myocyte-specific enhancer factor 2B
6c9l_C7e-19161161Myocyte-specific enhancer factor 2B
6c9l_D7e-19161161Myocyte-specific enhancer factor 2B
6c9l_E7e-19161161Myocyte-specific enhancer factor 2B
6c9l_F7e-19161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028863e-86AM502886.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM20 (WM20 gene).
GenBankDQ5123593e-86DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds.
GenBankDQ5123623e-86DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds.
GenBankDQ5344913e-86DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288306.18e-36MADS-box transcription factor 5-like
RefseqXP_020184037.18e-36MADS-box transcription factor 5-like
SwissprotA2Y9P06e-36MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB86e-36MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A3B6SDB33e-37A0A3B6SDB3_WHEAT; Uncharacterized protein
TrEMBLA0A446Y2P63e-37A0A446Y2P6_TRITD; Uncharacterized protein
TrEMBLA0A446Y2V99e-37A0A446Y2V9_TRITD; Uncharacterized protein
STRINGTraes_7BS_F4CFCDF52.12e-53(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.32e-33MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]