PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_1913741A8.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 157aa MW: 16700.6 Da PI: 6.9456

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_1913741A8.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.1	5.4e-17	56	144	1	78
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 lp+G++F+Ptd+el+ e+L++kv++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+ Traes_7DL_1913741A8.1 56 LPAGVKFDPTDQELI-EHLEAKVQSGGtgaaaapshplI---DefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGT 138 799**********.99**999666665554432...154444776646******.556667799********** PP NAM 73 rknrat 78 rk+r++ Traes_7DL_1913741A8.1 139 RKRRKI 144 **75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-16	48	144	IPR003441	NAC domain
PROSITE profile	PS51005	14.951	56	157	IPR003441	NAC domain
Pfam	PF02365	1.0E-5	57	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MDDGATATAG GGGGASSGGH HLIGSRIEEH RKYMSESSCC PRCGYKIDQK LDWVGLPAGV 60 KFDPTDQELI EHLEAKVQSG GTGAAAAPSH PLIDEFIPTI EGEDGICYTH PEKLPGVSKD 120 GLSRHFFHRP SKAYTTGTRK RRKIQPPATV DASTLSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164992.1	1e-110	uncharacterized protein LOC109750443
Swissprot	Q9M0F8	3e-57	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A453SDP3	1e-111	A0A453SDP3_AEGTS; Uncharacterized protein
TrEMBL	A0A453SE10	1e-111	A0A453SE10_AEGTS; Uncharacterized protein
TrEMBL	A0A453SE11	1e-111	A0A453SE11_AEGTS; Uncharacterized protein
STRING	Traes_7DL_1913741A8.1	1e-112	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	6e-59	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]