PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_2FE5181AF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 185aa    MW: 20757.2 Da    PI: 10.1108
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_2FE5181AF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1997152156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rrk+ ++tkeq   Le  F+ ++ +s+ +++eLA++l+L+ rqV vWFqNrRa+ k
  Traes_7DL_2FE5181AF.1  97 RRKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTK 152
                            79999*************************************************98 PP
2HD-ZIP_I/II112.62.5e-3698185188
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+keq +lLE sF++++ L++ +K+elar+L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en++L++e  eLr
  Traes_7DL_2FE5181AF.1  98 RKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTKLKQTEVDCEFLKRWCESLTHENQQLKHELLELR 185
                            69*********************************************************************************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2073155IPR009057Homeodomain-like
SuperFamilySSF466891.5E-2077155IPR009057Homeodomain-like
PROSITE profilePS5007117.83194154IPR001356Homeobox domain
SMARTSM003892.9E-1596158IPR001356Homeobox domain
CDDcd000862.01E-1397155No hitNo description
PfamPF000469.0E-1797152IPR001356Homeobox domain
PRINTSPR000318.5E-5125134IPR000047Helix-turn-helix motif
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PRINTSPR000318.5E-5134150IPR000047Helix-turn-helix motif
PfamPF021832.5E-9154185IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.3E-7154185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MERRDLGAWL GLATGGGAAW HTHDGERRPD PVRLDELFPQ RGKEERDHGE QVARNTGGKG  60
ARRKIKVGGD DEGRSSSSNG PCLSDGGGSD GGGGGGRRKK LRLTKEQCAL LEGSFRAHNI  120
LSHVQKQELA RQLNLSSRQV EVWFQNRRAR TKLKQTEVDC EFLKRWCESL THENQQLKHE  180
LLELR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102GRRKKLRL
2146154RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180166.11e-132homeobox-leucine zipper protein HOX18-like
RefseqXP_020181275.11e-132homeobox-leucine zipper protein HOX18-like
SwissprotA2YGL95e-48HOX18_ORYSI; Homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F65e-48HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A3B6TJF11e-130A0A3B6TJF1_WHEAT; Uncharacterized protein
TrEMBLA0A453SQR71e-130A0A453SQR7_AEGTS; Uncharacterized protein
TrEMBLA0A453SQS41e-130A0A453SQS4_AEGTS; Uncharacterized protein
STRINGEMT037641e-130(Aegilops tauschii)
STRINGTraes_7DL_2FE5181AF.11e-130(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-36HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]