PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_303249AE4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 145aa    MW: 15839.3 Da    PI: 10.3088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_303249AE4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.3e-111149341
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                           ie  + r  t ++R +g+ KKA+EL +LC++ va++  +
  Traes_7DL_303249AE4.1 11 IEKARARAETHARRTKGLQKKASELATLCAVPVALVCSA 49
                           888899999**************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-10160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-16175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.83152IPR002100Transcription factor, MADS-box
PfamPF003197.9E-111149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MARRKVPMRL IEKARARAET HARRTKGLQK KASELATLCA VPVALVCSAG AGAPPLVWES  60
EEGVLERYRR AVPAEARARH THRSYMETEL GKERAKLART RHGCPGVLAD WDAALNDMTL  120
DGARGLLDTI DAALRATGDR MEALG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743771e-166AK374377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3063B17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196824.14e-95uncharacterized protein LOC109782612
TrEMBLA0A453SJ698e-94A0A453SJ69_AEGTS; Uncharacterized protein
STRINGTraes_7DL_303249AE4.12e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.17e-07AGAMOUS-like 86
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]