PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_3640B95AB.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 502aa    MW: 55984.9 Da    PI: 6.3083
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_3640B95AB.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.12.6e-25198250255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +r++Wt eLH++F+ea++q+ G +kA P +ilelm+v++Lt+++++SHLQkYRl
  Traes_7DL_3640B95AB.3 198 TRVKWTIELHNKFLEAINQI-GLDKAAPNKILELMNVDCLTRHNIASHLQKYRL 250
                            79******************.********************************8 PP
2Response_reg71.53.3e-24261341109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+++ +++l+++l++ +y + + + d++ al++l++ +  +Dl+l+D++mp+mdG++ll+ i  e  +lp+i+++   +++ +
  Traes_7DL_3640B95AB.3  26 VLAVDDDRVCLKVLEVLLRHCKY-QPTMVMDAKTALKMLRAGKeqFDLVLTDVRMPDMDGFKLLELIGLEM-DLPVIMLSVDCNKKAV 111
                            799****************9999.888999999****99776666**********************6644.8*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga d+l+Kp++ +el +
  Traes_7DL_3640B95AB.3 112 MKGINHGACDYLMKPVHTNELKN 134
                            *******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-3222147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-3823178No hitNo description
SMARTSM004482.8E-2624136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.89925140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2126134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.48E-2327139No hitNo description
PROSITE profilePS512949.291194256IPR017930Myb domain
SuperFamilySSF466891.25E-18194254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-26194255IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23197250IPR006447Myb domain, plants
PfamPF002497.7E-6199249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAAMGGNQRQ TMEDAAEDKF PEGLRVLAVD DDRVCLKVLE VLLRHCKYQP TMVMDAKTAL  60
KMLRAGKEQF DLVLTDVRMP DMDGFKLLEL IGLEMDLPVI MLSVDCNKKA VMKGINHGAC  120
DYLMKPVHTN ELKNIWQHVE SRRRSQAISH MSRDNDNNHR VHPGTLARNK DSKTKSNEKD  180
GSNENKESTR ASTTQKNTRV KWTIELHNKF LEAINQIGLD KAAPNKILEL MNVDCLTRHN  240
IASHLQKYRL YLNRVKPNSL GDASERQNSS MDNQRNFMHN HEHERWHVSS CGIPSWSPNY  300
FSATSQLGQL MDSQSSLCMG SLIHGSRMSR YLVPHTLDAR RFAGSEDPPI SLDNGILDDI  360
MLDEFSSYSS GTSYVDSMRD KLMETSKGKT PSNLRSYFTN TPSGRGSSAP TNGTGSTSKT  420
ETNMFNSGKT ISTLSNFQTD GFIALTPMPD GGDAAGILPV QESMVNQQEP NDLLNDINAF  480
SSDDIANLLN DDFIGEDAVV DG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-20193255163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-38HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197192.10.0two-component response regulator ARR12-like
TrEMBLA0A3B6TS000.0A0A3B6TS00_WHEAT; Uncharacterized protein
STRINGTraes_7DL_3640B95AB.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.15e-84response regulator 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]