PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_38929DD1E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 110aa    MW: 12176.8 Da    PI: 8.792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_38929DD1E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162848323
                           ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                           C +C++ F+++  L  H++ H
  Traes_7DL_38929DD1E.1 28 CVYCHRKFRTSQALGGHQNAH 48
                           ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.89E-62553No hitNo description
PROSITE profilePS5015710.8872653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEHAQDELSL ELTLAAAVMA PVPGFFLCVY CHRKFRTSQA LGGHQNAHKE ERAAKRRRDT  60
AAPTAHAWKP GRSAAAVWVS EEPAAEGGMV QKRSRSSSER DHELDLSLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152485.13e-63uncharacterized protein LOC109737768
TrEMBLA0A3B6TMR41e-74A0A3B6TMR4_WHEAT; Uncharacterized protein
STRINGTraes_7DL_38929DD1E.12e-75(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]