PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_77A6A7FBF.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 257aa    MW: 29069.8 Da    PI: 8.4823
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_77A6A7FBF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-081942272154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp++e++++L +++gL+ +q+ +WF N+R +
  Traes_7DL_77A6A7FBF.2 194 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 227
                            569*****************************87 PP
2ELK29.71.4e-10148169122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELKh+L+++Y+++L+++++E++
  Traes_7DL_77A6A7FBF.2 148 ELKHELKQGYREKLVDIREEIL 169
                            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012567.4E-135094IPR005541KNOX2
PfamPF037912.6E-115593IPR005541KNOX2
SMARTSM011880.0014148169IPR005539ELK domain
PfamPF037892.2E-6148169IPR005539ELK domain
PROSITE profilePS5121310.196148168IPR005539ELK domain
PROSITE profilePS5007111.596168231IPR001356Homeobox domain
SMARTSM003894.9E-10170235IPR001356Homeobox domain
SuperFamilySSF466895.56E-16170235IPR009057Homeodomain-like
CDDcd000862.78E-11171232No hitNo description
Gene3DG3DSA:1.10.10.602.3E-24175232IPR009057Homeodomain-like
PfamPF059202.7E-18188227IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
RQKQTPKNNY KCPFAKQAGA PLPGNGNSPC VKVITDHLPF SICVLKVLLP LLQTHYVLLL  60
CSFKEQLQQH VRVHAMEAVM ACWELEQTLQ SLTGASPGEG TGATMSDDED NPVDSESNMF  120
DGNDVSDGMG FGMLTEGERS LVERVRQELK HELKQGYREK LVDIREEILR KRRAGKLPGD  180
TASTLKAWWQ AHAKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPTSSSSDK  240
SKRKRNNAGD GNAEQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224244RKRNWHSNPTSSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539450.0AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196996.11e-151homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-133KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A453T5T41e-154A0A453T5T4_AEGTS; Uncharacterized protein
STRINGTraes_7DL_77A6A7FBF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-113KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]