PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_82722EDAD.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 128aa    MW: 14305.5 Da    PI: 11.8277
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_82722EDAD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind316.6e-101214060
                           THHHHSTT--HHHHHHHHHHT CS
           HSF_DNA-bind 40 vLpkyFkhsnfaSFvRQLnmY 60
                           +Lp +Fkh+nf+SFvRQLn+Y
  Traes_7DL_82722EDAD.2  1 MLPAHFKHNNFSSFVRQLNTY 21
                           599****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004473.1E-6121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-5113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-8128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-5221IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-51426IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MLPAHFKHNN FSSFVRQLNT YVSQLIPTRS VGLPQGGSGP VGVRXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXWP HRRRHDHGRH GGGEAEEGAE HHRRQGGRHV APRAGDGAEA  120
QADARVPP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2346531e-74KF234653.1 Triticum aestivum heat shock factor C2a (HsfC2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_7DL_82722EDAD.25e-55(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-09heat shock transcription factor B2A
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]