PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_A773A64E2.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 103aa    MW: 10685.3 Da    PI: 4.6153
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_A773A64E2.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.6e-17141949
                           HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           rqvtfskR+ g+ KKA EL  LC a  a+++fs+ gk + +
  Traes_7DL_A773A64E2.2  1 RQVTFSKRKSGLWKKAAELALLCRASLAIVVFSEAGKAFAF 41
                           8***********************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-17150IPR002100Transcription factor, MADS-box
PfamPF003192.5E-18141IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-11144IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.848145IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-10722IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-102243IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
RQVTFSKRKS GLWKKAAELA LLCRASLAIV VFSEAGKAFA FGSPSTDAVL GCADVDGNAL  60
APVPAADDVE WEALETLCQE TGAMGVEVAA EAERMSAVGK KVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175896.19e-67agamous-like MADS-box protein AGL61
TrEMBLA0A3B6TLY72e-65A0A3B6TLY7_WHEAT; Uncharacterized protein
TrEMBLA0A453S7C52e-65A0A453S7C5_AEGTS; Uncharacterized protein
STRINGTraes_7DL_A773A64E2.27e-67(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-19AGAMOUS-like 29
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]