PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_AD6EAD1A61.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 241aa    MW: 27610.4 Da    PI: 8.6175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_AD6EAD1A61.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-52101401128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wk
  Traes_7DL_AD6EAD1A61.1  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWK 95 
                             69****************************.9***************943444442456**************************** PP

                     NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             atg+dk+++   +++ +g++ktLvfy grap+g+ktdW+mheyrl
  Traes_7DL_AD6EAD1A61.1  96 ATGRDKAIFLGsGSRRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 140
                             *********9767788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-575147IPR003441NAC domain
PROSITE profilePS5100556.54210191IPR003441NAC domain
PfamPF023654.0E-2811140IPR003441NAC domain
SuperFamilySSF1019417.98E-57179191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSGSR RIGMRKTLVF  120
YVGRAPHGKK TDWIMHEYRL DEDNVEVQVG KAFIRHELKA SPTDTGLSFL TSIIWSEMQE  180
DGWVVCRVFT KKSYTRGVNP AEMAGYDDDE LLHPFPVPSS TAGAMQMITD QKHIMHNPGH  240
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-47819315167NO APICAL MERISTEM PROTEIN
1ut4_B3e-47819315167NO APICAL MERISTEM PROTEIN
1ut7_A3e-47819315167NO APICAL MERISTEM PROTEIN
1ut7_B3e-47819315167NO APICAL MERISTEM PROTEIN
3swm_A3e-47819318170NAC domain-containing protein 19
3swm_B3e-47819318170NAC domain-containing protein 19
3swm_C3e-47819318170NAC domain-containing protein 19
3swm_D3e-47819318170NAC domain-containing protein 19
3swp_A3e-47819318170NAC domain-containing protein 19
3swp_B3e-47819318170NAC domain-containing protein 19
3swp_C3e-47819318170NAC domain-containing protein 19
3swp_D3e-47819318170NAC domain-containing protein 19
4dul_A3e-47819315167NAC domain-containing protein 19
4dul_B3e-47819315167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022241e-170AK102224.1 Oryza sativa Japonica Group cDNA clone:J033087M22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169406.11e-152NAC domain-containing protein 76
SwissprotQ5Z6B61e-110NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A453S6581e-160A0A453S658_AEGTS; Uncharacterized protein
STRINGTraes_7DL_AD6EAD1A6.10.0(Triticum aestivum)
STRINGTraes_7DL_AD6EAD1A61.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-83NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]