PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_B0F38D6EB.3

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 98aa MW: 10956.2 Da PI: 8.3023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_B0F38D6EB.3	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	2	22	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F + + ++H +++ Traes_7DL_B0F38D6EB.3 2 CRKCGKAFAVRGDWRTHEKNC 22 *****************9987 PP
2	zf-C2H2	11.1	0.0013	30	45	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg F++k +Lk Hir Traes_7DL_B0F38D6EB.3 30 CGSDFKHKRSLKDHIR 45 ***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG HAPCGIDCFD 60 LDDDDRDPSS EVDHTVNTAA AATTTNSAGS DRRHWKAN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369874	1e-141	AK369874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100E06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149153.1	6e-67	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-34	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A3B6SQE8	2e-65	A0A3B6SQE8_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6TVS5	1e-65	A0A3B6TVS5_WHEAT; Uncharacterized protein
TrEMBL	A0A446YQC2	2e-65	A0A446YQC2_TRITD; Uncharacterized protein
TrEMBL	A0A453SKH7	1e-65	A0A453SKH7_AEGTS; Uncharacterized protein
STRING	Traes_7DL_B0F38D6EB.3	2e-66	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	3e-33	WIP domain protein 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]