PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_ED348696E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 411aa    MW: 44073.5 Da    PI: 9.1453
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_ED348696E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.5e-41171247177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cq+egC+adls ak+yhrrhkvCe h+ka+ v+++g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Traes_7DL_ED348696E.1 171 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASLVAAAGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 247
                            6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-34164233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.394169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38170249IPR004333Transcription factor, SBP-box
PfamPF031108.5E-31172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMSGGRMNAA AGDDFPFAAM QQPPYVGFEH AGMVQAGGXX XXXXXXXXXX XXXXXXXXXX  60
XGQFQDAPHH QMNGGGAGGL LPMAPPPMPG MQLQMPTMGM HGHGDVYPAL GMVKREGGGG  120
AGDAGRIGLN LGRRTYFSPG DMMAVDRLLM RSRLGGVFGL GFGGAHHQPP RCQAEGCKAD  180
LSGAKHYHRR HKVCEYHAKA SLVAAAGKQQ RFCQQCSRFH VLTEFDEAKR SCRKRLAEHN  240
RRRRKPASSS TTATSKDSAP PSKKPNPGAI SSSYAADNNN LSATKSTISS NTSAISCLQQ  300
HDQSKAAAAA ARPMTLTLGE PREKDDHQHL SNAMQLHHHH QEQQHFITSL LQQNNNGNGN  360
SNILSCSSVC SSGLPSAGAA NGEVSDQNNN SNHGGGNNNN NNMHLFEVDF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-291722451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228245KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478860.0KF447886.1 Triticum aestivum squamosa promoter-binding-like protein 22 (SPL22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180500.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-100SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-100SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A453T3100.0A0A453T310_AEGTS; Uncharacterized protein
TrEMBLX5D5550.0X5D555_WHEAT; Squamosa promoter-binding-like protein 22
STRINGTraes_7DL_ED348696E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-46squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]