PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_F53A3F676.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SRS
Protein Properties Length: 290aa    MW: 30548.3 Da    PI: 6.3382
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_F53A3F676.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70279.68.1e-2513521971154
                 DUF702  71 askrkrelkskkq.salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            a+kr+rel  +     +++t ++ a++++     ++P+e+s eavfrcvr++ vd+ ++e+aYqtavsigGh+fkGiL+d+G++e
  Traes_7DL_F53A3F676.1 135 ANKRPRELVRSLGrLPSATTAMVDATTSSGEGDGRFPPELSLEAVFRCVRIGPVDEPDAEFAYQTAVSIGGHTFKGILRDHGPAE 219
                            56777776433330333445556666677777888***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-22131218IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.3E-18169217IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
GGGGGGGIGF QLWHPHHQQA AAVPHTSQFF SSGVATGVVL GFSPHEGGGV GGVGLAGXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXAVANKRPR ELVRSLGRLP SATTAMVDAT TSSGEGDGRF PPELSLEAVF  180
RCVRIGPVDE PDAEFAYQTA VSIGGHTFKG ILRDHGPAEE ATGQLPPSSA EYHQLTGAAR  240
EGSSPAGSSE AAGGHGATVA TSAAVLMDPY PTPIGAFAAG TQFFPHNPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6783470.0AB678347.1 Hordeum vulgare subsp. vulgare Lks2 gene for putative short internodesfamily transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192925.11e-102protein SHI RELATED SEQUENCE 1-like
RefseqXP_020192926.11e-102protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3B6TVV41e-101A0A3B6TVV4_WHEAT; Uncharacterized protein
TrEMBLA0A453SJ921e-101A0A453SJ92_AEGTS; Uncharacterized protein
STRINGTraes_7DL_F53A3F676.11e-105(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-24Lateral root primordium (LRP) protein-related