PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_10A9C68FA.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 50aa MW: 6240.12 Da PI: 10.6921

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_10A9C68FA.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	63.3	5.7e-20	1	50	30	88
ES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 30 vldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++ Traes_7DS_10A9C68FA.1 1 VWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRR 50 7899*********************************999.........9999999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00447	3.1E-17	1	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	5.1E-11	1	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.8E-22	1	50	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.36E-17	1	50	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.5E-11	11	23	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	12	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-11	24	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 50 aa Download sequence Send to blast
VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKIVPDR WEFANDCFRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ771755	2e-73	JQ771755.1 Triticum aestivum HSF3 mRNA, complete cds.
GenBank	KP063542	2e-73	KP063542.1 Triticum aestivum heat-responsive transcription factor (HSF-2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022157722.1	3e-33	heat stress transcription factor B-2b
Refseq	XP_022157731.1	3e-33	heat stress transcription factor B-2b
Refseq	XP_022157741.1	3e-33	heat stress transcription factor B-2b
Refseq	XP_022157749.1	3e-33	heat stress transcription factor B-2b
Refseq	XP_022157757.1	3e-33	heat stress transcription factor B-2b
Refseq	XP_022157765.1	3e-33	heat stress transcription factor B-2b
Refseq	XP_024031939.1	3e-33	LOW QUALITY PROTEIN: heat stress transcription factor B-2b
Refseq	XP_028767505.1	2e-33	heat stress transcription factor B-2b-like
Refseq	XP_028779877.1	2e-33	heat stress transcription factor B-2b-like
Refseq	XP_028779882.1	2e-33	heat stress transcription factor B-2b-like
Swissprot	Q652B0	8e-34	HFB2C_ORYSJ; Heat stress transcription factor B-2c
Swissprot	Q6Z9C8	7e-34	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A0A9DMW6	1e-31	A0A0A9DMW6_ARUDO; Uncharacterized protein
TrEMBL	A0A0E0LXM8	1e-31	A0A0E0LXM8_ORYPU; Uncharacterized protein
TrEMBL	A0A0E0M3M8	1e-31	A0A0E0M3M8_ORYPU; Uncharacterized protein
TrEMBL	A0A0P0XPJ6	7e-32	A0A0P0XPJ6_ORYSJ; Os09g0526600 protein (Fragment)
TrEMBL	A0A1E5V3Q7	1e-31	A0A1E5V3Q7_9POAL; Heat stress transcription factor B-2c
TrEMBL	A0A2S3H1H5	1e-31	A0A2S3H1H5_9POAL; Uncharacterized protein
TrEMBL	A0A2S3I4N0	1e-31	A0A2S3I4N0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EUW8	1e-31	A0A2T7EUW8_9POAL; Uncharacterized protein
TrEMBL	A0A3B6KKD8	1e-31	A0A3B6KKD8_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6LQQ2	1e-31	A0A3B6LQQ2_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6MVJ6	1e-31	A0A3B6MVJ6_WHEAT; Uncharacterized protein
TrEMBL	A0A446T9R5	1e-31	A0A446T9R5_TRITD; Uncharacterized protein
TrEMBL	A0A453LDQ9	1e-31	A0A453LDQ9_AEGTS; Uncharacterized protein
TrEMBL	A6MD12	1e-31	A6MD12_ORYBR; Heat shock factor
TrEMBL	F2CR81	1e-31	F2CR81_HORVV; Predicted protein
TrEMBL	I1IS20	1e-31	I1IS20_BRADI; Uncharacterized protein
TrEMBL	K3ZU13	1e-31	K3ZU13_SETIT; Uncharacterized protein
STRING	OPUNC08G20670.1	2e-32	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	3e-33	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687] Rerksiri W,Zhang X,Xiong H,Chen X Expression and promoter analysis of six heat stress-inducible genes in rice. ScientificWorldJournal, 2013. 2013: p. 397401 [PMID:24459431]