PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_22DE624A5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 659aa    MW: 72017.7 Da    PI: 6.3139
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_22DE624A5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-28218271155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Traes_7DS_22DE624A5.1 218 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 271
                            79*******************.********************************8 PP
2Response_reg78.32.6e-26301381109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + +
  Traes_7DS_22DE624A5.1  30 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSV 115
                            799********************.***************99999********************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                            l+ +  Ga d+l Kp+ +eel++
  Traes_7DS_22DE624A5.1 116 LKGITHGACDYLLKPVRIEELRN 138
                            *********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.7E-1785659IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.9E-4127173No hitNo description
SuperFamilySSF521726.4E-3527154IPR011006CheY-like superfamily
SMARTSM004485.6E-3128140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.85829144IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-2330138IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.87E-2631143No hitNo description
PROSITE profilePS5129411.131215274IPR017930Myb domain
SuperFamilySSF466891.79E-19216275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30216276IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25218271IPR006447Myb domain, plants
PfamPF002491.2E-6220270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MLLDAMMMEA RKGLMERERE RDQFPVGMRV LAVDDDPVCL KVLEVLLRRC QYHVTTTNQA  60
ATALRLLREN KDMFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSVNG ETKSVLKGIT  120
HGACDYLLKP VRIEELRNVW QHVVRRKFSN REPNNNLDLC KEISKPPSAD SYHRLGQATC  180
DSHRSCDQSN RAGKKRKEPH SEEEDEGEDN DDAAGSKKPR VVWSVELHRK FVAAVNQLGI  240
DKAVPKRILE LMNVEKLTRE NVASHLQKYR LYLRRLSAVA SQQASIAAAF GGRDPFLHMG  300
AFEGLHSYHQ PFAPSAALPS FNPHGLLSSA GAAAFGLQDL ASPKANQCSS SNGIASHCAG  360
DTEKFHIVSL QDNQQADLSQ GLTASSLGQP QLQQKWIHQE TNDLCSVISG GALANTMSGT  420
LQRVTSSSLP PEDLLECTPH IKVGAHPSIG IPTGSSGLLE RSVGVSANLR DSCISQQCAL  480
PISEGFSVNK LPLHIPFDGT GVTKLDASFV AGEQEMDQKG IFLERMSVSV CPSESLIVAS  540
NAKCRASSSG SIILPLPRDT ERHSKYLQFG AASNSRHRMD GMRQDQRLNS GGFSYDGGAI  600
VPEQTDMYDL GVPKLQGGFN SSSCNFDGLL NSIIKVESDE VPFTENDLGC ELFPLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-24215277264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A3B6TFC60.0A0A3B6TFC6_WHEAT; Two-component response regulator
STRINGTraes_7DS_22DE624A5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-106response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]