PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_366A869CF.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11288.1 Da    PI: 11.414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_366A869CF.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.5e-24143951
                           HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rqvtfskRr g++KKAeEL vLCda+va+++fsstgkl  ++s
  Traes_7DS_366A869CF.3  1 RQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS 43
                           8**************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.044145IPR002100Transcription factor, MADS-box
PfamPF003196.8E-23141IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-20144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-21147IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-15722IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-152243IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
RQVTFSKRRR GLFKKAEELA VLCDADVALV VFSSTGKLSQ FASSRHVPSP LFPPRPVTSI  60
SHLTHAYTCV LLPSPFSLFS TRSVRSSRVP DSMRIPDPRC TG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3566953e-68AK356695.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038F17.
GenBankAM5028913e-68AM502891.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM24A (WM24A gene).
GenBankAM5028923e-68AM502892.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM24B (WM24B gene).
GenBankDQ0226793e-68DQ022679.1 Triticum aestivum MADS box protein VRT-2 mRNA, complete cds.
GenBankDQ2011663e-68DQ201166.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo MADS box protein VRT-2 mRNA, complete cds.
GenBankDQ2011683e-68DQ201168.1 Hordeum vulgare subsp. vulgare cultivar Morex MADS box protein VRT-2 mRNA, complete cds.
GenBankDQ5123523e-68DQ512352.1 Triticum aestivum MADS-box transcription factor TaAGL36 (AGL36) mRNA, complete cds.
GenBankHQ5883263e-68HQ588326.1 Brachypodium distachyon MADS-box (SVP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287W2862e-31A0A287W286_HORVV; Uncharacterized protein
STRINGTraes_7DS_366A869CF.32e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-10AGAMOUS-like 24
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]