PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_405F08A53.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 199aa MW: 22215.3 Da PI: 4.6181

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_405F08A53.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.3	2.6e-27	141	190	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF++pi++AA+eL+v+lTvLK++CR++GI+RWPhRk+k l Traes_7DS_405F08A53.1 141 RVLTFELVSQYFYMPITQAARELNVGLTVLKKKCRELGIPRWPHRKLKNL 190 6699*******************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.349	127	199	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-22	143	189	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
CTGVHQKVLS SAFVFAKLIQ FFFSCTSFWP YGPSVWHDSY LLEDEALLCS LPFLSFGCQP 60 LCSNSPAVAQ SSSLQAPCLV PCDTGELDTS FDDDLLRCWE AIEQSDDSTE DSGKGLPLLC 120 YGEESGAASN AMRADRVRSE RVLTFELVSQ YFYMPITQAA RELNVGLTVL KKKCRELGIP 180 RWPHRKLKNL QTLINDVEV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003509	1e-41	AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBank	AP003569	1e-41	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	1e-41	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-41	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164800.1	1e-116	protein RKD4-like
TrEMBL	A0A3B6TGL9	1e-125	A0A3B6TGL9_WHEAT; Uncharacterized protein
TrEMBL	A0A453R6E7	1e-125	A0A453R6E7_AEGTS; Uncharacterized protein
STRING	Traes_7DS_405F08A53.1	1e-146	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-25	RWP-RK domain-containing protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]