PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_76515C538.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 45aa    MW: 5144.93 Da    PI: 10.8336
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_76515C538.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081232548
                           HHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding 25 ktIartmgkgRtlkqcksrwqkyl 48
                           ++Ia +++ gRt++++k++w+++l
  Traes_7DS_76515C538.1  1 SSIATKLP-GRTDNEIKNYWNTHL 23
                           58******.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.42E-6123No hitNo description
PfamPF002492.7E-6123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-12124IPR009057Homeodomain-like
PROSITE profilePS5129416.158127IPR017930Myb domain
SuperFamilySSF466897.5E-7229IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 45 aa     Download sequence    Send to blast
SSIATKLPGR TDNEIKNYWN THLRKKLLGM GIDPVTHRPR TDLSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0572605e-40EF057260.1 Panicum virgatum microsatellite PVSSR146 and microsatellite PVSSR147 sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229990.12e-24transcription factor MYB93
SwissprotQ9SBF39e-19MYB92_ARATH; Transcription factor MYB92
TrEMBLM7ZPE62e-23M7ZPE6_TRIUA; Transcription factor MYB39
STRINGBRADI1G51747.17e-24(Brachypodium distachyon)
STRINGTraes_7DS_76515C538.12e-25(Triticum aestivum)
STRINGTRIUR3_17295-P13e-24(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-23myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]