PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_7A30E1397.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 64aa    MW: 7291.48 Da    PI: 10.3255
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_7A30E1397.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-22246751
                           HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           s rqvt skRr  +lKKA EL +LCd++v vi+fsstg lyey++
  Traes_7DS_7A30E1397.1  2 SSRQVTSSKRRRSLLKKARELAILCDVQVGVIVFSSTGCLYEYAN 46
                           67*****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-15147IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.493148IPR002100Transcription factor, MADS-box
PfamPF003193.6E-20244IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-19355IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-131025IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-132546IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MSSRQVTSSK RRRSLLKKAR ELAILCDVQV GVIVFSSTGC LYEYANPPPP SPWTYNKKYN  60
DVKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171942.16e-21agamous-like MADS-box protein AGL21
SwissprotQ84NC21e-17MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A3B6SCW52e-28A0A3B6SCW5_WHEAT; Uncharacterized protein
TrEMBLA0A446Y1F22e-28A0A446Y1F2_TRITD; Uncharacterized protein
STRINGTraes_7DS_7A30E1397.12e-40(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-12AGAMOUS-like 44
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]