PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_9FBF54244.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 646aa    MW: 70470.3 Da    PI: 4.421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_9FBF54244.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.92e-53221501129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+ykvePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+t
  Traes_7DS_9FBF54244.1  22 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTT 108
                            579***************************.99***************4357888999****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            gkd+ev + + ++vg+kktLvf+ grapkge+t+Wvmheyrle
  Traes_7DS_9FBF54244.1 109 GKDREVRH-GARVVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 150
                            ********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-6119170IPR003441NAC domain
PROSITE profilePS5100559.27922170IPR003441NAC domain
PfamPF023651.4E-2824149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MTHPSSSSSS APAAAPDDPT SLAPGFRFHP TDEELVSYYL KRKVLGRPLK VDAIAEVDLY  60
KVEPWDLPAR SRLRSRDSQW YFFSRLDRKH ANRARTNRAT AGGYWKTTGK DREVRHGARV  120
VGMKKTLVFH AGRAPKGERT NWVMHEYRLE GDGAAGIPQD SFVVCRIFQK AGPGPQNGAQ  180
YGAPFVEEEW EADEDDDFGP MPVQRDVFGE HEAPGAMEKG YLQMNDLIQD LAGQNENGSV  240
VLPVSDTSNT SSHSEDVEGN SGDILNDPSL GSNFLQYIHP GEQNSPMLNE NMLSNANVGD  300
FLNSSSPNDE FLELKDLELP LGNDSTIWPS DGWAWKTAFP LDAVNGANNE VPLITGDQPF  360
QPDELAQLLQ TLQDDSSQLG STMTDLPHSS ITNSVKPEDD SLMYFDAPFD NSMFSDGFRQ  420
TNGFLGSPAT ILSGIETLDD GIPYYDAMDD NLFNDMMCSV QQSAGSSSHV FNGPVLTQEV  480
NNPNYTYSPT QKVVEPNFVA GAPSSARLSE AGGQLNCVVL PDSQAKNGSM GKRFVKMLDS  540
ISAPPAFAAE FPGKSLSGVH PNTISVSTEV ISIGSLTVAS RQGKWSFQKD EDMELLFSTG  600
FQPDNRIHCG GCNTVTAVLR GGFCLFFLSA IMLLVSYEVG LCIYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-482117014168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0275740.0HM027574.2 Triticum aestivum NAC transcription factor NTL5 (NTL5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181541.10.0NAC domain-containing protein 78-like
TrEMBLA0A3B6TJS50.0A0A3B6TJS5_WHEAT; Uncharacterized protein
STRINGTraes_7DS_9FBF54244.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-76NAC domain containing protein 53
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]