PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_B8013B22B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 68aa    MW: 7865 Da    PI: 7.5373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_B8013B22B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-091456754
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           + E++RR+r+ ++f  L  l+P++     +K + a++   A+eYI++L
  Traes_7DS_B8013B22B.1 14 KKEKQRRQRLSEKFTALMLLIPNR-----TKEDRATVIYDAIEYIQEL 56
                           67*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.357756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-61362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-71456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-101563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-111565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-71656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
SSFHGFPANG GVEKKEKQRR QRLSEKFTAL MLLIPNRTKE DRATVIYDAI EYIQELGRTV  60
EELTLLVE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068502e-56AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175517.12e-40transcription factor TIP2-like
SwissprotQ5JNS04e-30TIP2_ORYSJ; Transcription factor TIP2
TrEMBLA0A3B6S9325e-39A0A3B6S932_WHEAT; Uncharacterized protein
TrEMBLA0A3B6T9W44e-39A0A3B6T9W4_WHEAT; Uncharacterized protein
TrEMBLA0A446Y2514e-39A0A446Y251_TRITD; Uncharacterized protein
TrEMBLM7YSI14e-39M7YSI1_TRIUA; Transcription factor bHLH89
TrEMBLR7W6874e-39R7W687_AEGTA; Transcription factor bHLH91
STRINGTraes_7DS_B8013B22B.19e-43(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-13bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]