PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_BF90D232B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 91aa    MW: 10049.9 Da    PI: 7.6885
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_BF90D232B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08448344
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           +WT    + + da +++ ++   +W  +ar++g g++ +++k ++
  Traes_7DS_BF90D232B.1  4 SWTFKQNKVFEDALAKYDKDapdRWQNVAREVGDGKSVEDVKKHF 48
                           7*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.706156IPR017884SANT domain
SMARTSM007172.0E-5154IPR001005SANT/Myb domain
SuperFamilySSF466892.82E-10355IPR009057Homeodomain-like
PfamPF002491.3E-5448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSSWTFKQN KVFEDALAKY DKDAPDRWQN VAREVGDGKS VEDVKKHFAE LEKDVDEIHT  60
NGAGSSSNNT KGGSSRGGSS DGQRPRYLKS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-165891191RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519212e-90JF951921.1 Aegilops speltoides clone TaMYB38 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167022.12e-61protein RADIALIS-like 4 isoform X1
TrEMBLA0A3B6THT44e-60A0A3B6THT4_WHEAT; Uncharacterized protein
TrEMBLA0A453RGK24e-60A0A453RGK2_AEGTS; Uncharacterized protein
STRINGTraes_7DS_BF90D232B.17e-61(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-20RAD-like 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]