PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_C74DAC3CE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 85aa    MW: 9893.95 Da    PI: 11.3037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_C74DAC3CE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-084572330
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIart 30
                           rW+  E+e l ++v+q+G+ +Wk I  +
  Traes_7DS_C74DAC3CE.1 45 RWSSVEEETLRKGVEQFGSSNWKDILIH 72
                           9************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-83882IPR009057Homeodomain-like
SuperFamilySSF466892.39E-84083IPR009057Homeodomain-like
PfamPF002495.1E-64572IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
QWEDSLDPDG SRSQSHRPHL PSPRRISVSP LQVAENKARR RRARRWSSVE EETLRKGVEQ  60
FGSSNWKDIL IHNSDAFIGR TTVWT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755072e-78AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185046.13e-50uncharacterized protein LOC109770747
TrEMBLA0A453QXN85e-51A0A453QXN8_AEGTS; Uncharacterized protein
STRINGTraes_7DS_C74DAC3CE.14e-55(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-08TRF-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]