PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_D435DF316.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 66aa    MW: 7658.95 Da    PI: 11.292
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_D435DF316.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.2e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           kri+nks rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  Traes_7DS_D435DF316.1  9 KRIDNKSSRQVTFAKRRNGLLKKAHELSVLCDAEVALIIFSTRGRLFEFST 59
                           79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.847161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.75E-36262No hitNo description
SuperFamilySSF554553.01E-29364IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MRRGKVELKR IDNKSSRQVT FAKRRNGLLK KAHELSVLCD AEVALIIFST RGRLFEFSTS  60
SCMWNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-18161161Myocyte-specific enhancer factor 2B
1tqe_Q2e-18161161Myocyte-specific enhancer factor 2B
1tqe_R2e-18161161Myocyte-specific enhancer factor 2B
1tqe_S2e-18161161Myocyte-specific enhancer factor 2B
6c9l_A2e-18161161Myocyte-specific enhancer factor 2B
6c9l_B2e-18161161Myocyte-specific enhancer factor 2B
6c9l_C2e-18161161Myocyte-specific enhancer factor 2B
6c9l_D2e-18161161Myocyte-specific enhancer factor 2B
6c9l_E2e-18161161Myocyte-specific enhancer factor 2B
6c9l_F2e-18161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028863e-92AM502886.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM20 (WM20 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196761.12e-38MADS-box transcription factor 5-like isoform X1
RefseqXP_020196768.12e-38MADS-box transcription factor 5-like isoform X2
RefseqXP_020196774.12e-38MADS-box transcription factor 5-like isoform X3
RefseqXP_020196782.12e-38MADS-box transcription factor 5-like isoform X4
SwissprotA2Y9P09e-36MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB89e-36MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A3B6TE363e-37A0A3B6TE36_WHEAT; Uncharacterized protein
TrEMBLA0A453QSV43e-38A0A453QSV4_AEGTS; Uncharacterized protein
STRINGTraes_7DS_D435DF316.13e-41(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-32AGAMOUS-like 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]