PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_E2A582546.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 138aa MW: 15682.6 Da PI: 10.8327

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_E2A582546.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	91.7	7.7e-29	1	51	26	76
HHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 26 vhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +h+k p v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Traes_7DS_E2A582546.1 1 MHTKEPRVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKA 51 69***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03110	1.7E-20	1	50	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	7.2E-18	1	38	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.683	1	51	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.08E-25	1	55	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MHTKEPRVVV AGLEQRFCQQ CSRFHQLPEF DQGKRSCRRR LAGHNERRRK APPGPLATRY 60 GRLAASFEEP GRFRSYLLDF SYPRVPSSVR DAWPGARPGY RMPGEIQWQG NLDLRPHTGA 120 ATGYHGHHAY SSHGGGFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-20	1	50	35	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF447877	0.0	KF447877.1 Triticum aestivum squamosa promoter-binding-like protein 17 (SPL17) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146461.1	5e-96	squamosa promoter-binding-like protein 17
Swissprot	A3C057	3e-69	SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBL	A0A3B6TQC3	1e-94	A0A3B6TQC3_WHEAT; Uncharacterized protein
TrEMBL	A0A453RJM5	1e-94	A0A453RJM5_AEGTS; Uncharacterized protein
TrEMBL	N1R194	1e-94	N1R194_AEGTA; Squamosa promoter-binding-like protein 17
STRING	EMT19900	2e-95	(Aegilops tauschii)
STRING	Traes_7DS_E2A582546.1	1e-97	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2527	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	9e-30	squamosa promoter binding protein-like 9

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]