PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_FE8BC1125.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family BBR-BPC
Protein Properties Length: 331aa    MW: 36544.3 Da    PI: 9.8313
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_FE8BC1125.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind382.85.6e-11713311301
              GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                            md+ g+re  r+++  y+        p++++k++ +++l+++++erd++i er++al+ekkaa+aerdmaf+qrd+a+aern+a+ver
  Traes_7DS_FE8BC1125.1   1 MDNLGHREngRQRPdPYKalhtqwmmPQRQMKDHHSMNLLALMSERDTAIMERDHALAEKKAAMAERDMAFAQRDSAMAERNAAIVER 88 
                            99999998899999888899999999889*********************************************************** PP

              GAGA_bind  78 dnkllalllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaee.akekkkkkkrqr 155
                            dn+l+al+l++++     + ++++ ++l+g+k+ ++ +q+ +      ql+ds+++ +re+++++a+pi++a+ + a ++kk+kk+++
  Traes_7DS_FE8BC1125.1  89 DNALAALELARTNGFnmnNGTGFNPGSLNGAKNFHHQDQQPHaqsspLQLADSPYDhAREMHISDAYPISTAPVSaAGKAKKPKKNSS 176
                            *******9988875545578888899**********999877789999********9*************9976615789999***** PP

              GAGA_bind 156 akkpkekkak..kkkkksekskkkvkkesader.......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
                            +++p+++ +   +k+kk   ++++  ++++ e+       +k+e+k++dl+ln+vs+Des++P+P+CsCtG+lrqCYkWGnGGWqS+C
  Traes_7DS_FE8BC1125.1 177 QASPLKRPSGvlRKTKKAGGDWRDAGMSGVGEDparaaseMKNEWKDQDLGLNQVSFDESSMPAPACSCTGVLRQCYKWGNGGWQSSC 264
                            ******9999887777788899999998877556788888************************************************ PP

              GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            Ct+++S+yPLPv++++r+aR++grKmS++af+klL++LaaeG+dls  vDLkdhWAkHGtn+++tir
  Traes_7DS_FE8BC1125.1 265 CTMSMSMYPLPVMPNKRHARMGGRKMSGSAFTKLLSRLAAEGHDLSASVDLKDHWAKHGTNRYITIR 331
                            ******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-1541331IPR010409GAGA-binding transcriptional activator
PfamPF062178.9E-981331IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDNLGHRENG RQRPDPYKAL HTQWMMPQRQ MKDHHSMNLL ALMSERDTAI MERDHALAEK  60
KAAMAERDMA FAQRDSAMAE RNAAIVERDN ALAALELART NGFNMNNGTG FNPGSLNGAK  120
NFHHQDQQPH AQSSPLQLAD SPYDHAREMH ISDAYPISTA PVSAAGKAKK PKKNSSQASP  180
LKRPSGVLRK TKKAGGDWRD AGMSGVGEDP ARAASEMKNE WKDQDLGLNQ VSFDESSMPA  240
PACSCTGVLR QCYKWGNGGW QSSCCTMSMS MYPLPVMPNK RHARMGGRKM SGSAFTKLLS  300
RLAAEGHDLS ASVDLKDHWA KHGTNRYITI R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745600.0AK374560.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069B24.
GenBankAK3748700.0AK374870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3078K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158993.10.0barley B recombinant-like protein D
RefseqXP_020158994.10.0barley B recombinant-like protein D
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A3B6TI190.0A0A3B6TI19_WHEAT; Uncharacterized protein
STRINGTraes_7DS_FE8BC1125.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.16e-99basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]