PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0002ss00200.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 97aa    MW: 11261.8 Da    PI: 10.6429
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0002ss00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP82.55.7e-262289478
                       STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP  4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                       +++C ++l+ ak+y+rrhkvC+ hsk pvvl+s ++qr       fhel efDe+krsCr+ La+hnerrrk+++
  Vang0002ss00200.1 22 ADECGVNLNMAKSYNRRHKVCDRHSKVPVVLLSSIRQR-------FHELAEFDETKRSCRKTLAEHNERRRKSRT 89
                       689********************************997.......7**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114119.7261787IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-252291IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.1E-172274IPR004333Transcription factor, SBP-box
PfamPF031102.0E-182286IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MVRNYTAHRR MKGEDSIGKQ MADECGVNLN MAKSYNRRHK VCDRHSKVPV VLLSSIRQRF  60
HELAEFDETK RSCRKTLAEH NERRRKSRTD MSLGGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1823861484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0002ss00200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-58AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519658.14e-42squamosa promoter-binding-like protein 3
SwissprotQ6Z4618e-24SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A1S3VMQ68e-41A0A1S3VMQ6_VIGRR; squamosa promoter-binding-like protein 3
STRINGGLYMA11G08905.15e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-23squamosa promoter binding protein-like 3