PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0002ss00360.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 388aa MW: 44342.5 Da PI: 6.5664

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0002ss00360.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84	1.4e-26	260	309	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl+dl +yF +pi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Vang0002ss00360.1 260 AKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 309 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.463	244	329	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-22	262	309	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
LVFASFYQST LHASSYPLLI SHSHAIFHLF MDSSPTNNTT LLTNLLLFNN TVQPELMRSL 60 HVYRQGDEEE RAVEREFLFS ECGSYVEMQA TPILKFVKSH VSQVFQGYKN GVWLCIFAFH 120 DDHTPRFCRI PPLLLVSRNP KLQMVPNLLH DLHVIYKLDR KEEDKDTTLG STGEECQGNS 180 NNFQPSEKVF PVLDQDLNYL PYEEDESELL DNETDVESSP GSVNTLAVFS AALLLYGHIE 240 SLDSLGLLGK KKRAPSDLVA KISLSDLVQY FGMPIVEASR NLNVGLTVLK RKCREFGIPR 300 WPHRKIKSLD SLIHDLQEEA KSQELEDMEA AMAVAKRQRM LECEKENIEK KPFMDIQTET 360 KRFRQDVFKR RHRARAVGKH NSTVSNT*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

LVFASFYQST LHASSYPLLI SHSHAIFHLF MDSSPTNNTT LLTNLLLFNN TVQPELMRSL  60
HVYRQGDEEE RAVEREFLFS ECGSYVEMQA TPILKFVKSH VSQVFQGYKN GVWLCIFAFH  120
DDHTPRFCRI PPLLLVSRNP KLQMVPNLLH DLHVIYKLDR KEEDKDTTLG STGEECQGNS  180
NNFQPSEKVF PVLDQDLNYL PYEEDESELL DNETDVESSP GSVNTLAVFS AALLLYGHIE  240
SLDSLGLLGK KKRAPSDLVA KISLSDLVQY FGMPIVEASR NLNVGLTVLK RKCREFGIPR  300
WPHRKIKSLD SLIHDLQEEA KSQELEDMEA AMAVAKRQRM LECEKENIEK KPFMDIQTET  360
KRFRQDVFKR RHRARAVGKH NSTVSNT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0002ss00360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017427598.1	0.0	PREDICTED: protein RKD5 isoform X1
Refseq	XP_017427599.1	0.0	PREDICTED: protein RKD5 isoform X2
TrEMBL	A0A0L9URA1	0.0	A0A0L9URA1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T412	0.0	A0A0S3T412_PHAAN; Uncharacterized protein
STRING	XP_007157999.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-82	RWP-RK domain-containing protein