PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0002ss01300.1

Common Name

LR48_Vigan06g063600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 247aa MW: 27608.8 Da PI: 4.6988

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0002ss01300.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.2	3e-09	84	115	2	33
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtf 33 fYn+YA++vGFs+r+s s++s+r+g+i++r++ Vang0002ss01300.1 84 FYNSYARRVGFSTRVSMSRRSRRDGSIIQRNL 115 ****************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-5	84	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEFEPLSLSN EVIEFDMIGL GYDATIDMEH PVEDGEDLVN IDYSPAAANS VLAAGVGPHI 60 FGGDTNLEPC QGMDFESEEA AKAFYNSYAR RVGFSTRVSM SRRSRRDGSI IQRNLRQQAL 120 KYVEEGVTSS EVYDVAISAL REAASKVASA TKNDGRQVIV NGTCEEYLRQ NNETTIRSSD 180 PPFCSQQSSY KDDQDRTIEK LTRQLDRARR KCEVYRSNLL SILKDIEEQK LQLSVKVQNV 240 KLGMKE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0002ss01300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017425938.1	9e-84	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0L9UR07	2e-82	A0A0L9UR07_PHAAN; Uncharacterized protein
STRING	GLYMA11G09400.1	1e-61	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-21	FAR1-related sequence 5

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]