PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0002ss01810.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 308aa    MW: 34611.4 Da    PI: 5.0585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0002ss01810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.3e-12140183654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Vang0002ss01810.1 140 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 183
                        589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15137195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9140183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-4141187No hitNo description
Gene3DG3DSA:4.10.280.109.1E-15141196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MLIPPTFVKD RIVGQSFQGM GLATLNPSFA AFSTPLDHRF ECPYGSEATH PFVDEFSLPE  60
LESLYTRNDE SAPVLPQEDN PSLEDEEFGF LGSDNQSLEQ AKNGCKIEEQ LTEIPVFNMG  120
LCAEKKLKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM  180
KELLERIGKL QEEEMEEGTN HINLLGNSKE LKPNEAMVRN SPKFDVERRQ HDTRISICCA  240
TKLGLLLSTV NTLEALGLEI HQCVISNFND FSMQATCSEA AEQRNCTSPE DIKQALFRNA  300
GYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142149ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0002ss01810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310970.0KT031097.1 Glycine max clone HN_CCL_167 bHLH transcription factor (Glyma01g02390.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429113.10.0PREDICTED: transcription factor bHLH93-like isoform X1
SwissprotQ9LSL13e-87BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0L9UXV20.0A0A0L9UXV2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2M30.0A0A0S3T2M3_PHAAN; Uncharacterized protein
STRINGGLYMA01G02390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-89beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]