PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00140.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 399aa    MW: 43082.1 Da    PI: 6.949
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-101155345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        W+ e d+ + +a + ++ +   +W++Ia+ ++ g+t +++k ++ 
  Vang0004ss00140.1 11 EWSREQDKAFENALATHPEDasdRWEKIAADVP-GKTIEEIKQHYE 55
                       7********************************.**********95 PP
2Myb_DNA-binding24.75.5e-082322681147
                        HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Vang0004ss00140.1 232 LFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 268
                        6788899*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.934762IPR017884SANT domain
SMARTSM007171.6E-9860IPR001005SANT/Myb domain
SuperFamilySSF466896.06E-111066IPR009057Homeodomain-like
PfamPF002498.3E-91155IPR001005SANT/Myb domain
CDDcd001673.75E-91158No hitNo description
Gene3DG3DSA:1.10.10.606.4E-51155IPR009057Homeodomain-like
PROSITE profilePS512935.596220273IPR017884SANT domain
TIGRFAMsTIGR015575.8E-12227271IPR006447Myb domain, plants
SuperFamilySSF466891.5E-10229274IPR009057Homeodomain-like
CDDcd001676.20E-5231269No hitNo description
SMARTSM007172.2231271IPR001005SANT/Myb domain
PfamPF002497.2E-6232268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5232267IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MTVDEVDSSS EWSREQDKAF ENALATHPED ASDRWEKIAA DVPGKTIEEI KQHYELLVED  60
VSQIESGCVP LPSYNSSSEG STNHASDEGA GKKGSGLGNF NSESNHGTKA SRSDQERRKG  120
IAWTEDEHRQ VHYCLCIFWK ILHAANASIV RNLVLKSSEN FDAVPCADSL GIDFLSGESE  180
RVYYTADFWW LNESFGALGG PTIVEKPRRY STRMPNVMAL FCFNISNCLN RLFLLGLDKY  240
GKGDWRSISR NFVVTRTPTQ VASHAQKYFI RLNSMNKDRR RSSIHDITSV NNGDVLAPQG  300
PITGQTNGAA TNSTAKATKQ ATPASTGVPG VGIYAAPTIG QPVGGPLVSA VGTPVNLPSP  360
AHMAYGVRAP VTGAVVSGAP VSMSPVTYPM PHTSAPHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-18877776RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427671.11e-116PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017427672.11e-116PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017427673.11e-116PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017427674.11e-116PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017427675.11e-116PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017427677.11e-116PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-63SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2H5P3M61e-155A0A2H5P3M6_CITUN; Uncharacterized protein
TrEMBLA0A498IAQ11e-146A0A498IAQ1_MALDO; Uncharacterized protein
STRINGXP_007153178.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-66MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]