PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00370.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 435aa    MW: 49132.5 Da    PI: 9.0742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00370.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-17796398
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                        +l+ s +l+s++l++p  f++++g +   s+  tl+ ++g  W++ l  +k ++++++ +GW++Fv+   + +g f+vF+++g+s+f   v++
  Vang0004ss00370.3  7 HKLVLSTTLQSRQLRIPDIFLRKYGTQ--LSTVATLTVPDGSIWRIGL--KKADSKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSF--IVHI 94
                       56777999999*************966..9999***************..*************************************9..9999 PP

                       E- CS
                 B3 97 fr 98
                       f+
  Vang0004ss00370.3 95 FN 96
                       86 PP
2B357.32.9e-18301392499
                        E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l v
  Vang0004ss00370.3 301 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRIKEVVLQV 387
                        78899******************876743...59999999********665555..66***********************98879999999 PP

                        EEE-S CS
                 B3  95 kvfrk 99 
                        +vfr 
  Vang0004ss00370.3 388 TVFRV 392
                        99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-22397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-20397IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-17496No hitNo description
PROSITE profilePS5086313.112598IPR003340B3 DNA binding domain
SMARTSM010191.4E-14698IPR003340B3 DNA binding domain
PfamPF023621.1E-14796IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-24290391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24291392IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-21296391No hitNo description
SMARTSM010192.7E-18298393IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93298393IPR003340B3 DNA binding domain
PfamPF023624.8E-16301391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MARPCFHKLV LSTTLQSRQL RIPDIFLRKY GTQLSTVATL TVPDGSIWRI GLKKADSKIW  60
FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EINYQSAMRN HMEGPCFVNY  120
NHIFEEMEDI DSIDLSDLSP SYLTSGAMQN KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL  180
NRVNWGDGGS SYSSKSANSQ GSQSTRDIGV QFNAVEFKRS TDELKLRYSN EEAVNKTAKK  240
KRKSESQGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKA FEPTNPFCRV  300
VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE  360
FTVENNLGEG DVCVFELLRI KEVVLQVTVF RVTEDASLLN SPPVQQLSQN MSHTKLLNPH  420
LQHRVSSTVK LIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-7126439415144B3 domain-containing transcription factor VRN1
4i1k_B3e-7126439415144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00370.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0946860.0BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427777.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
SwissprotQ8L3W11e-129VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0S3T1K00.0A0A0S3T1K0_PHAAN; Uncharacterized protein
STRINGXP_007153153.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-124B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]