PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00990.2
Common NameLR48_Vigan06g156400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 556aa    MW: 60402.2 Da    PI: 6.1989
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00990.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.7e-25198248152
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                        kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQ 
  Vang0004ss00990.2 198 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQG 248
                        79*******************.*****************************6 PP
2Response_reg571.1e-194012426109
                        EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++++ ++ + + + ++ Ga d+l Kp+ +eel++
  Vang0004ss00990.2  40 VTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRN 124
                        88999************99***********************6644.8************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011029.36912130IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.5E-1318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.39E-2040129No hitNo description
SuperFamilySSF521722.99E-2540137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.8E-3040146No hitNo description
PfamPF000723.0E-1640125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.962195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-25195247IPR009057Homeodomain-like
SuperFamilySSF466894.12E-16195251IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-22198248IPR006447Myb domain, plants
PfamPF002493.9E-7200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAQSRSAAGA CKGATAEFPA GLRSLFELSF SVYLCFYLPV TTCTEATVAL NLLRERKGCF  60
DVVLSDVHMP DMDGYKLLEH VGLEMDLPVI MMSGDSTTSA VMKGIRHGAC DYLIKPVREE  120
ELRNIWQHVV RKIWNENKEH DNSGSMEDSD WNKRGNDDTE YTSSVADAAE VVKAPKKRSS  180
LKEEDIELES DDPATSKKPR VVWSVELHQQ FVSAVNQLGL DKAVPKRILE LMNVPGLTRE  240
NVASHLQGWL TRLPVVDEKF RLYLKRLSGV AQQQNGMLNA VPGTIESNLS ATGRFDIQAL  300
AAAGHVPPET LAALHAELLG RPATNILSTA DQATLLQASI GLKHSHAEHA VAYGQPFVKC  360
PSNIGKDFPP SFLTANDMSS GYGAWPSSNN TMGSAVNGSA SVNQNCSFGM NAVIDYSLLS  420
QKSNNSVSAS QFSGGDTKAR AVLYAHTMPS TCSMSSINGS IQQLQNSTLT FGGARPLPSP  480
LPMSDRQDPY GLKSGDSFDQ VCLRNIGFIG KGTCIPNRFV QNEIESSVSD FSQMKVNVDS  540
TGNALKEEPN FINMQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19197268464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00990.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022643111.10.0two-component response regulator ORR21 isoform X2
SwissprotA2XE311e-126ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-126ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A3Q0FHC80.0A0A3Q0FHC8_VIGRR; Two-component response regulator
STRINGXP_007153220.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-99response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]