PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0004ss01230.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

BBR-BPC

Protein Properties

Length: 120aa MW: 13748.5 Da PI: 4.957

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0004ss01230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	35	4.4e-11	26	109	9	91
GAGA_bind 9 rnkgyye.pa.aslkenlglqlmssiaerdaki.rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 r + +++ ++ ++l +++++ s++aer+a i + + a +++k+a+a++d+a ++rd+al +r++a++e+dn l++l+ ++ + Vang0004ss01230.1 26 RIHEFHQvKEpNALV--MNKKIRSIMAERQAVIlKLELEAAISEKNALAAQDEAIQERDEALVQRDNAILEQDNSLTTLQSQNSYV 109 333333342236677..99**********9964444567888999******************************9966543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	2.2E-6	30	104	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MEDCRQNEND IHKMEYYRGP HFMVNRIHEF HQVKEPNALV MNKKIRSIMA ERQAVILKLE 60 LEAAISEKNA LAAQDEAIQE RDEALVQRDN AILEQDNSLT TLQSQNSYVT FPFGSGIQC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0004ss01230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-149	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014507568.1	3e-61	protein BASIC PENTACYSTEINE4
Refseq	XP_014507569.1	3e-61	protein BASIC PENTACYSTEINE4
TrEMBL	A0A0L9UUL1	2e-70	A0A0L9UUL1_PHAAN; Uncharacterized protein
STRING	XP_007159983.1	9e-54	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	7e-24	basic pentacysteine 4