PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s01170.5
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 190aa    MW: 21804.6 Da    PI: 8.2773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s01170.5genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-0594116123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+F  + + ++H +++
  Vang0005s01170.5  94 FGCRKCGKPFAVRGDWRTHEKNC 116
                       56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-579114No hitNo description
Gene3DG3DSA:3.30.160.602.2E-580114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MFNRFNNMQV INQPHLKKIK TKNQSMHMWG HGSQYRKGPE SLRGAKPASS MLRLPCYCCA  60
EGCKNNIDHP RSRPLKDFRT LQTHYKRKHG AKPFGCRKCG KPFAVRGDWR THEKNCGKLW  120
FCICGSDFKH KRSLKDHVRA FGDGHAPHTV ESCDQIGEDD LFGDEDEEEL DLEDDDEGYN  180
SNEVVFGFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0005s01170.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426956.11e-112PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-84ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0L9UTT81e-111A0A0L9UTT8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T1T21e-111A0A0S3T1T2_PHAAN; Uncharacterized protein
STRINGXP_007153349.11e-109(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.12e-86C2H2-like zinc finger protein