PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss01310.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 198aa    MW: 21984.1 Da    PI: 4.8106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss01310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013153123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + Fs+   L  H++ H
  Vang0010ss01310.1 31 YECNFCRRGFSNAQALGGHMNIH 53
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-62457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.24E-72858No hitNo description
PROSITE profilePS5015711.5933158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MESDHDQQAA ISENPSDGED QGATHVTSRS YECNFCRRGF SNAQALGGHM NIHRKDKAKL  60
KQQQSSNQPS LDKVIPPQDQ TKSGEERNTP KWNWNVSQEE HASSRASHTR QQLPLFEESP  120
TSSETLKPQG QNTTDGALLS TRDSSLKLDL ELRLGLEPQD SSPETVGYVS VTTFCLATFD  180
LHEEIVYLVP MCTGEFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss01310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406299.11e-119PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A0L9T7Z61e-117A0A0L9T7Z6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SD051e-117A0A0S3SD05_PHAAN; Uncharacterized protein
STRINGXP_007132037.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein